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The
dsRNA segments and proteins of Golden Shiner virus (genus Aquareovirus:
family Reoviridae)
Updated
August 2003 Available
as a word file
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† Genome
Segment
(Size
bp) |
ORFs
bp
(inclusive) |
Proteins
(':
Function) |
Protein
Size aa
(Da) |
Copy
Number
/
Particle |
Location1 |
Accession
Numbers |
Functions
and Properties
[cognate
proteins] |
|
1
( 3949) |
13-
3909 |
VP1(CaP) |
1299
(141266) |
|
|
AF403398 |
Guanylyl
transferase / methyl transferase |
|
2
(3877) |
13-
3834 |
VP2(Pol) |
1274
(141585) |
minor
structural protein |
internal
core protein |
AF403399 |
RNA-dependent
RNA polymerase (Pol)
[Comparable to
Orthoreovirus lambda 3, Orbivirus VP1, Rotavirus VP1, Cypovirus
VP2] |
|
3
(3702) |
13-
3654 |
VP3(Hel) |
1214
(132058) |
|
|
AF403400 |
NTPase/helicase |
|
4
(2320) |
26-
2251 |
NS1 |
742
(79463) |
|
|
AF403401 |
non-structural
protein |
|
5
(2239) |
18-
2201 |
VP5 |
728
(80249) |
|
core |
AF403402 |
NTPase |
|
6
(2039) |
31-
1974 |
VP4 |
648
(68557) |
|
virion |
AF403403 |
Outer capsid
protein |
|
7
(1414) |
14-
451 |
NS5 |
146
(15705) |
|
N
/ S |
AF403404 |
|
|
520-
1341 |
NS4 |
274
(31171) |
|
N
/ S |
|
|
8
(1297) |
13-
1248 |
VP6 |
412
(44594) |
|
core |
AF403405 |
|
|
9
(1130) |
32-
1087 |
NS2 |
352
(37695) |
|
N
/ S |
AF403406 |
|
|
10
(909) |
31-
858 |
VP7 |
276
(29790) |
major
structural protein |
virion |
AF403407 |
outer capsid
protein |
|
11
(820) |
43-
774 |
NS3 |
244
(26491) |
|
N
/ S |
AF403408 |
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':Protein structure/function: RNA polymerase = (Pol); Helicase + (Hel). Other
species within the genus may have proteins with significant differences in
sizes.
1 :
The location of the viral polymerase is deduced by comparison to other members
of the family Reoviridae.
† Genome
segments numbered based on molecular weight (migration during agarose gel
electrophoresis).
Proteins sizes were
calculated from RNA sequences.
Table constructed by
Peter Mertens with data provided by Houssam
Attoui
Please make suggestions
for changes or updates to this table by e-mail to Peter Mertens peter.mertens@bbsrc.ac.uk
References
1.
Fang,
Q, Attoui, H, Biagini, P, Cantaloube JF, Zhu Z, de Micco P, de Lamballerie X.
(2000). Sequence of genome segments 1, 2, and 3 of the Grass Carp Reovirus.
Biochemical and Biophysical Research Communications, 274: 762-766.
2.
Attoui,
H., Fang, Q., Mohd Jaafar, F., Cantaloube, J. F, Biagini, P., de Micco, P., de
Lamballerie, X. (2002). Common evolutionary origin of aquareoviruses and
orthoreoviruses revealed by genome characterisation of the golden shiner
reovirus, grass carp reovirus, striped bass reovirus and golden ide reovirus
(genus Aquareovirus, family Reoviridae. Journal of General Virology 83:
1941-1951.
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